PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000913269

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 229aa MW: 25364.5 Da PI: 7.0621

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000913269	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	51.3	1.9e-16	59	110	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++keq L e F+++++++ ++++eLAk+l+L rqV vWFqNrRa MDP0000913269 59 RKKLMLSKEQSPLLDETFKEHNTLNLKQKQELAKQLNLRLRQVEVWFQNRRA 110 678889*********************************************9 PP
2	HD-ZIP_I/II	64.7	2.3e-21	59	111	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+ lskeq+ lL+e+F+e+++L+ ++K+ela++L+l+ rqv+vWFqnrRA MDP0000913269 59 RKKLMLSKEQSPLLDETFKEHNTLNLKQKQELAKQLNLRLRQVEVWFQNRRAS 111 699************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	3.9E-5	3	28	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	9.7E-17	38	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.99E-16	42	110	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.224	55	110	IPR001356	Homeobox domain
SMART	SM00389	2.8E-11	57	119	IPR001356	Homeobox domain
Pfam	PF00046	9.3E-14	59	111	IPR001356	Homeobox domain
CDD	cd00086	3.15E-13	59	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MANFEEENGV SSSNSTVSSL SRKISEREPI VDKNEGERTS CSHDGSSDDE DGNGGDMSRK 60 KLMLSKEQSP LLDETFKEHN TLNLKQKQEL AKQLNLRLRQ VEVWFQNRRA SFFAVLPLLY 120 APPSSSSSPR VFRVFRGIFW GFPSWIIPSH SSDKSPCAAG SAASLIRPPP DHHRTFLQSL 180 PSFSAAATAI IFEKLLIPTS LAPAESAKSV QIFRDQQTQP TKDELLSE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	2e-20	homeobox-leucine zipper protein 3

Link Out ? help Back to Top
Phytozome	MDP0000913269