PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000925405
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family Dof
Protein Properties Length: 142aa    MW: 16625.4 Da    PI: 10.8407
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000925405genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof42.51.4e-1396141348
         zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 
                    +k+++cpr  s  tkf  + ny+ls+ +  C+ C+r W  G +lrn
  MDP0000925405  96 KKMIPCPRFFSLRTKFHRFSNYNLSKDKRICRDCKRLWVVGASLRN 141
                    6889*****************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027015.9E-1097141IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-897141IPR003851Zinc finger, Dof-type
PROSITE profilePS5088415.66899141IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGNTEILPKL LEDRTYPFSL LQLERIRAAN KVLVKEDRDV KVKKPEIRKT DVERKRPAEK  60
KLELQNKDGR EKACSSRPAL RPTTDEIEQA KAEARKKMIP CPRFFSLRTK FHRFSNYNLS  120
KDKRICRDCK RLWVVGASLR N*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369287.12e-46PREDICTED: cyclic dof factor 2-like
RefseqXP_028959856.12e-46cyclic dof factor 2-like isoform X1
RefseqXP_028959857.12e-46cyclic dof factor 2-like isoform X2
TrEMBLA0A498I8U48e-63A0A498I8U4_MALDO; Uncharacterized protein
STRINGXP_008351884.14e-86(Malus domestica)
STRINGXP_008356968.18e-89(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29160.16e-13Dof family protein