PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000936873
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YB
Protein Properties Length: 187aa    MW: 20947.3 Da    PI: 7.1964
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000936873genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.41.3e-5544139297
          NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                    +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl++yrelegek
  MDP0000936873  44 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELEGEK 139
                    89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.8E-5439154IPR009072Histone-fold
SuperFamilySSF471136.68E-4146151IPR009072Histone-fold
PfamPF008088.4E-2849113IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.3E-197795No hitNo description
PROSITE patternPS0068508096IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.3E-1996114No hitNo description
PRINTSPR006151.3E-19115133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MVDNIGNNNS SADREGFKYN FTGGSSNVSS DYHHHLHNQE GVIKEQDRLL PIANVGRIMK  60
QILPPNAKIS KEAKETMQEC VSEFISFVTG EASDKCHKEK RKTVNGDDIC WALATLGFDD  120
YAEPLKRYLH RYRELEGEKA AHQGKANSNE EKAEVSPPRT RFPTAAADMS NPPYMERGNS  180
SLSRRF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4543134192Transcription factor HapC (Eurofung)
4g92_B6e-4543134192Transcription factor HapC (Eurofung)
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and siliques. {ECO:0000269|PubMed:11250072}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008368975.11e-140nuclear transcription factor Y subunit B-5
SwissprotO822482e-64NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A498K5M21e-138A0A498K5M2_MALDO; Uncharacterized protein
STRINGXP_008368975.11e-139(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.18e-67nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]