PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000937920

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

C2H2

Protein Properties

Length: 417aa MW: 47219.9 Da PI: 7.9396

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000937920	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.5e-05	158	181	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++ +Lk+H + H MDP0000937920 158 YVCGVCGRKCKTNLDLKKHFKQlH 181 9******************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	2.7E-7	78	148	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.679	158	186	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	160	181	IPR007087	Zinc finger, C2H2
CDD	cd06167	3.35E-11	170	312	No hit	No description
Gene3D	G3DSA:3.40.50.1010	2.7E-7	243	311	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MKLLCNPIHT FPYKPFPSIS LHSSRSPFFH SKRALLPQPI IXTAATSTTR NCRRGVIKSS 60 ASSEIDMVQN KQGIYTPKQK KVVILWDLDN KPPRGXPYQA AMALKQLAQR FGEVVDASAY 120 ANRHAFVHLP QWVIEERRER KQLDILERKG VVTPPDPYVC GVCGRKCKTN LDLKKHFKQL 180 HERERQKKLN RMGSLKGKKR QRFKERFVSG NHKYNEAARS LMKPKVGYGL ASELRRAGVF 240 VKTVEDKPQA ADWALKRQMQ HSMSRGIDWL FLVSDDSDFS DMLRKAREAK LGTVVVGDMD 300 RALGRHADVW VPWIGVENGE VSEKDLVPRR RISEFFDGDE EENGDGLFSD FGFDGGSGLD 360 NVVDELVRSS QSGGLRISAF SEGELEGGDW VEDDSDSEEY LLDSENEDSD EEDGFF*

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MKLLCNPIHT FPYKPFPSIS LHSSRSPFFH SKRALLPQPI IXTAATSTTR NCRRGVIKSS  60
ASSEIDMVQN KQGIYTPKQK KVVILWDLDN KPPRGXPYQA AMALKQLAQR FGEVVDASAY  120
ANRHAFVHLP QWVIEERRER KQLDILERKG VVTPPDPYVC GVCGRKCKTN LDLKKHFKQL  180
HERERQKKLN RMGSLKGKKR QRFKERFVSG NHKYNEAARS LMKPKVGYGL ASELRRAGVF  240
VKTVEDKPQA ADWALKRQMQ HSMSRGIDWL FLVSDDSDFS DMLRKAREAK LGTVVVGDMD  300
RALGRHADVW VPWIGVENGE VSEKDLVPRR RISEFFDGDE EENGDGLFSD FGFDGGSGLD  360
NVVDELVRSS QSGGLRISAF SEGELEGGDW VEDDSDSEEY LLDSENEDSD EEDGFF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.25827	0.0	leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008357383.2	0.0	uncharacterized protein LOC103421127
TrEMBL	A0A498JC34	0.0	A0A498JC34_MALDO; Uncharacterized protein
STRING	XP_008357383.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6441	31	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-166	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	MDP0000937920