PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000938309
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB_related
Protein Properties Length: 352aa    MW: 39772.6 Da    PI: 9.9764
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000938309genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94e-122569347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +W +eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
    MDP0000938309 25 PWMKEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 69
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.4951874IPR017930Myb domain
SuperFamilySSF466892.11E-151975IPR009057Homeodomain-like
TIGRFAMsTIGR015572.8E-152172IPR006447Myb domain, plants
SMARTSM007171.0E-72272IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-102469IPR009057Homeodomain-like
PfamPF002492.7E-92569IPR001005SANT/Myb domain
CDDcd001672.80E-72570No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MWNRENDVVH NSGXNRECER KQGVPWMKEE HKLFLLGLQK VGKGDWRGIS RNFVKTRTPT  60
QVASHAQKYF LRRNNHNRRR RTSSLFDITT ETASPTPTDE ELVHLQDNAS QSHPLPHPPL  120
SNPRNASDFP MTVGLAALPV PIENPMENLA LRQANHENSA LAELVHPVAL QSSHHHHHLR  180
HFKPYIYIYI VFVPLLIDFF AVMPGILNFK KAEHDAGNLM KLSELSSLPC CSSFVADFSI  240
AVMVFLKCFK NNTITILAKE GDPQDSGMTL KLYAPLTSPK ALVLPIKDNS MHIKSWSSEV  300
SWEVVDSVRP TTKNKVCKLR IHILNSSHHD RANLLVKFKL LGDRIRSGVI A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.119801e-168bud| cell culture| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1967761e-115AY196776.1 Malus xiaojinensis transcription factor Myb1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281003.13e-86transcription factor MYB1R1-like
TrEMBLD9ZJ868e-85D9ZJ86_MALDO; MYBR domain class transcription factor
STRINGXP_008374278.11e-108(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.27e-36MYB_related family protein