PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000939633
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family RAV
Protein Properties Length: 402aa    MW: 43848.8 Da    PI: 9.5982
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000939633genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.37.7e-1376124155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa a++ a+++++g
  MDP0000939633  76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAATAYDVAAQRFRG 124
                    89****9888.8*********3.....5**********99*************98 PP
2B396.41.9e-30207315195
                    EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                    f+k+ tpsdv+k++rlv+pk++ae+h               ++  +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F
  MDP0000939633 207 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqsgstatitvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSF 302
                    89*************************999766666665533444999************************************************ PP

                    EE-SSSEE..EEE CS
             B3  83 kldgrsefelvvk 95 
                    +++   +++l++ 
  MDP0000939633 303 QRSTGPDKHLYID 315
                    *876677766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.42E-1776133IPR016177DNA-binding domain
CDDcd000181.33E-2576134No hitNo description
PfamPF008473.4E-876124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2077132IPR001471AP2/ERF domain
PROSITE profilePS5103219.96877132IPR001471AP2/ERF domain
SMARTSM003807.4E-3077138IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-40201320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30205319IPR015300DNA-binding pseudobarrel domain
CDDcd100175.95E-28206305No hitNo description
PROSITE profilePS5086313.197207318IPR003340B3 DNA binding domain
SMARTSM010196.1E-24207318IPR003340B3 DNA binding domain
PfamPF023628.9E-28207316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDGXSSTEES TTSDSISXSP PHHIVTRVEP LAKSAPQVDS LCRVGSGASS VILDSDLSSG  60
GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AATAYDVAAQ  120
RFRGRDAVTN FKPSSDDEEN DXVEAAFLSS HSKSEIVDML RKHTYNDELE QSKRNYFSYG  180
KRGXSNGPLG LFGTDNSRVQ KAREQLFEKA VTPSDVGKLN RLVIPKQHAE KHFPLQSGST  240
ATITVSASSA CKGVLLNFED VGGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKNLKAGDIV  300
SFQRSTGPDK HLYIDWKTRM SVYNNSNGSN PVQGQXAPVQ MVRLFGVNIF KIPGSSGAGP  360
VDAAAAAAIG GGCNNNIGKR MREMEFLKLE FSKKPRIIGA L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5620431911117DNA-binding protein RAV1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324600.0GU732460.1 Malus x domestica AP2 domain class transcription factor (AP2D36) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339704.20.0AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ9C6M51e-140RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A498HL510.0A0A498HL51_MALDO; Uncharacterized protein
STRINGXP_008339704.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-126RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]