PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000941410
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 318aa    MW: 35784.7 Da    PI: 6.8277
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000941410genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.23.6e-15240264226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    ktelC+ + +tGtC+yG++C+FaHg
  MDP0000941410 240 KTELCNKWEETGTCPYGENCQFAHG 264
                    9***********************9 PP
2zf-CCCH26.21.4e-08277302126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ykt lCr  +++G C+yG rC+F H+
  MDP0000941410 277 YKTQLCRMVLAGGACPYGHRCHFRHS 302
                    9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902297.98E-11235270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-18235271IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-9238265IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.629238266IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-12240264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-9272307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-13272305IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136276304IPR000571Zinc finger, CCCH-type
PfamPF006427.5E-6277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
METNTNTAFP NSPDSSRDFG DDCDSMYRTL FPPKYTLPSS LSLTPSTRST SFSDSDSDDH  60
HHHSTTSHNL NQAQLVLEYQ ELXDHYDLCN SHLRNLTNEL DSLRRENAQL RSANTDLVKL  120
LSSQAAFQSC LLSSSSSSAY QSPMAASFLD NFQRLGFGYL GPHDGVISEE SSDISPTSVI  180
ERNRLVNTDR ISLPKSISVR SSTRPRVPNQ LVSRPVTWMM LAFAQVQQSE MKVFNQGMLK  240
TELCNKWEET GTCPYGENCQ FAHGVRELRP VMRHPRYKTQ LCRMVLAGGA CPYGHRCHFR  300
HSLTEQEKLQ LAISESF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-24240305570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028964395.10.0zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A498JAZ60.0A0A498JAZ6_MALDO; Uncharacterized protein
STRINGXP_009357776.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-59C3H family protein