PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000944210

Common Name

BHLH7

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 316aa MW: 35446.9 Da PI: 6.3624

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000944210	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42	1.7e-13	117	168	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i A++++k+L+ MDP0000944210 117 QRMTHIVVERNRRKQMNEYLAVLRSLMPQS---YAQRGDQASIIGGAINFVKELE 168 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.35E-13	115	172	No hit	No description
SuperFamily	SSF47459	2.75E-17	116	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.529	116	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-14	117	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-10	117	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-9	122	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MALEAVIYPQ EYPFGFGCKD YYSFNGGGSW GSDFSLQDQQ GINENWDYCS SFPSLLQNVK 60 DWDPNSSPEA CTVDQSCPPG HLSAMETPPP PPPPATTNRR KRHRTKSSKN KEEIENQRMT 120 HIVVERNRRK QMNEYLAVLR SLMPQSYAQR GDQASIIGGA INFVKELEQL LQSMDSNKRS 180 KQQPLAEFFT FPQFSTRATQ CNQSAGLQAN ELNTTQFNNN QWAAAAADIE VTMVDSHANL 240 KILSKKRPRQ LLKMVAGFQS LRLSVLHLNV TTADEMVLYS VSVKIEEGCL LNTVDEIAAA 300 VNQMLRSINQ EVDFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	128	RMTHIVVERNRR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.22080	0.0	bud\| fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP689429	0.0	KP689429.1 Prunus pseudocerasus isolate Unigene16433 bHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001315808.1	0.0	transcription factor bHLH96-like
Swissprot	Q9C7T4	3e-90	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A498JG46	0.0	A0A498JG46_MALDO; Uncharacterized protein
STRING	XP_008363563.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF718	34	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-90	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000944210

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]