PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000945492

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

bHLH

Protein Properties

Length: 457aa MW: 50715.5 Da PI: 6.3082

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000945492	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.3e-13	256	301	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h +++r RR+++N++f++Lr+l+P++ +K++ a+i+ A+ YI++L MDP0000945492 256 KHLAIDRGRRQQLNDKFFTLRSLIPNP-----TKNDRASIVGDAIGYINEL 301 7999*********************.....9*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.583	252	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-14	255	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.20E-10	255	305	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.2E-12	255	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-10	255	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-10	258	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MYQDTVSCNF DPNPLPPPPP PQQPQVLMEE LSFHHHHQNH HSSVEMELQN ELGFNVDNPY 60 NTTTDHDTNI NNSHLVSFEH PTNWDNNIHG VHDQIQQQFP DGTTSTPYPQ PPDLLNLFSL 120 PRCSPSSLLQ NSSITFTNTL PKTSTSFGFL GDLPSAVDTP LGTASSVLYD PLLHLNLPPQ 180 PPMFRELLQS LPHGYTLPGS GNGSLFSSGG DEREGSGGGI YPDHGTINGS IFENGVMEFS 240 REMGSIGRGR NLKGSKHLAI DRGRRQQLND KFFTLRSLIP NPTKNDRASI VGDAIGYINE 300 LLRTVDELKL LVEKKRCGTE RSKRHKTEQD GGAGDENCNA KSEPHDQSYN NGSLRSSWLQ 360 RKSKDTEVDI RIIHDEVTIK LVQRKKINLL LSVSRLLDEL QLDLHHVAGG HIGNSYSFLF 420 NTKMYEGSCL YASAIAGKFI EVLDRQYSAV PPTSSY*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MYQDTVSCNF DPNPLPPPPP PQQPQVLMEE LSFHHHHQNH HSSVEMELQN ELGFNVDNPY  60
NTTTDHDTNI NNSHLVSFEH PTNWDNNIHG VHDQIQQQFP DGTTSTPYPQ PPDLLNLFSL  120
PRCSPSSLLQ NSSITFTNTL PKTSTSFGFL GDLPSAVDTP LGTASSVLYD PLLHLNLPPQ  180
PPMFRELLQS LPHGYTLPGS GNGSLFSSGG DEREGSGGGI YPDHGTINGS IFENGVMEFS  240
REMGSIGRGR NLKGSKHLAI DRGRRQQLND KFFTLRSLIP NPTKNDRASI VGDAIGYINE  300
LLRTVDELKL LVEKKRCGTE RSKRHKTEQD GGAGDENCNA KSEPHDQSYN NGSLRSSWLQ  360
RKSKDTEVDI RIIHDEVTIK LVQRKKINLL LSVSRLLDEL QLDLHHVAGG HIGNSYSFLF  420
NTKMYEGSCL YASAIAGKFI EVLDRQYSAV PPTSSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009373826.2	0.0	PREDICTED: transcription factor bHLH10-like
Refseq	XP_009373851.2	0.0	PREDICTED: transcription factor bHLH10-like
TrEMBL	A0A498KLS3	0.0	A0A498KLS3_MALDO; Uncharacterized protein
STRING	XP_008345255.1	0.0	(Malus domestica)
STRING	XP_008354804.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	2e-67	bHLH family protein

Link Out ? help Back to Top
Phytozome	MDP0000945492