PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C000019P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 265aa    MW: 28602.5 Da    PI: 9.0298
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C000019P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.0001596118123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C+ C+ksFs+   L  H  +H
  MELO3C000019P1  96 YNCNVCNKSFSSYQALGGHKASH 118
                     89**********99999998887 PP
2zf-C2H211.30.0011150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C k+F++   L  H r+H
  MELO3C000019P1 150 HQCSICFKCFPTGQALGGHKRRH 172
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.1E-1495120IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-996118No hitNo description
PROSITE profilePS5015710.55496123IPR007087Zinc finger, C2H2
SMARTSM003550.01696118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-9145172No hitNo description
PfamPF139123.7E-9149174IPR007087Zinc finger, C2H2
PROSITE profilePS501578.704150172IPR007087Zinc finger, C2H2
SMARTSM003550.5150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MALQALNSPS STFPLTDPSA LDHHHHHHHD PWIKPSKPRS KRPRFDSDDE YLAFCLLMLA  60
RGRISRSDHH STSTGDHSSY SPSSSPPPPP LLKLAYNCNV CNKSFSSYQA LGGHKASHRK  120
SDAGENNNVP PVVSTTLSNS TVGSGGSRTH QCSICFKCFP TGQALGGHKR RHYDGGSGNN  180
TNSSPAAAAA AGSDGNGSTL TQTHHRNFDL NIPALPDLWP GFTAGNRQKK SQSQSQSYQI  240
QDSTDQEVES PHPLKKPRLL LPME*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6834700.0LN683470.1 Cucumis melo genomic scaffold, unassembled_sequence30958.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008467082.10.0PREDICTED: zinc finger protein ZAT10-like
TrEMBLA0A1S3CSQ40.0A0A1S3CSQ4_CUCME; zinc finger protein ZAT10-like
STRINGXP_008467082.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.22e-32zinc-finger protein 2