PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C000922P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 128aa MW: 14636.8 Da PI: 9.0865

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C000922P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	116	3.8e-36	19	119	2	99
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrFhPtdeelv++yL++kve+++l++ e ik++diyk++PwdLp k+ ++kewyf++kr +ky+++ r+nr+t sg+Wkatg dk MELO3C000922P1 19 LPGFRFHPTDEELVSFYLRRKVEKRPLSI-ELIKQIDIYKHNPWDLPYgsscsKMGLGDKEWYFYCKRGRKYKNSIRPNRVTGSGFWKATGIDKG 112 59*************************.89***********557777777799******************************** PP NAM 92 vlskkgel 99 v+s +g l MELO3C000922P1 113 VYS-NGVL 119 9.5444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	35.567	18	127	IPR003441	NAC domain
SuperFamily	SSF101941	1.07E-36	19	121	IPR003441	NAC domain
Pfam	PF02365	5.4E-16	20	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
METPEVCNGE GDQEEEISLP GFRFHPTDEE LVSFYLRRKV EKRPLSIELI KQIDIYKHNP 60 WDLPYGSSCS KMGLGDKEWY FYCKRGRKYK NSIRPNRVTG SGFWKATGID KGVYSNGVLV 120 KALKLIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-32	10	117	6	109	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN689546	1e-103	LN689546.1 Cucumis melo genomic scaffold, unassembled_sequence36985.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139890.2	7e-82	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Refseq	XP_008466914.1	4e-83	PREDICTED: transcription factor JUNGBRUNNEN 1-like, partial
Swissprot	Q9ZVH0	2e-49	FEZ_ARATH; Protein FEZ
TrEMBL	A0A0A0K418	2e-80	A0A0A0K418_CUCSA; Uncharacterized protein
TrEMBL	A0A1S3CSB0	8e-82	A0A1S3CSB0_CUCME; transcription factor JUNGBRUNNEN 1-like
STRING	XP_008466914.1	1e-82	(Cucumis melo)
STRING	XP_004159185.1	3e-81	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	8e-52	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]