PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C001968P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 84aa    MW: 9483.89 Da    PI: 4.8236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C001968P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-0911521655
                    HHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHHH CS
             HLH 16 iNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksLq 55
                    +++  ++Lr+llP+ +    +s   s  eiL+++++YIk+Lq
  MELO3C001968P1 11 LKNLVSKLRTLLPQlNHkPDNSSEASTGEILKETCDYIKKLQ 52
                    677789********5555555555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003530.0077157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.477151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-5955No hitNo description
SuperFamilySSF474591.14E-8956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-101062IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-61152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MASSKLGDNE LKNLVSKLRT LLPQLNHKPD NSSEASTGEI LKETCDYIKK LQKEVDDLSE  60
RLWKQLDSMG VDFEMVKDLL IFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819324e-79LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132664e-79LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440200.15e-54PREDICTED: transcription factor PRE5-like
TrEMBLA0A1S3B0J11e-52A0A1S3B0J1_CUCME; transcription factor PRE5-like
STRINGXP_008440200.12e-53(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.11e-17bHLH family protein