PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C001996P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 333aa MW: 37425.7 Da PI: 8.8842

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C001996P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177	5.1e-55	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL+kkv ++++ + + i evd++k+ePwdLp k+k +e+ewyfF+ rd+ky+tg r+nrat+sgyWkatgkdke+++ MELO3C001996P1 17 LPPGFRFHPTDEELISHYLCKKVVDSNFCC-KPIGEVDLNKSEPWDLPWKAKMGEREWYFFCLRDRKYPTGLRTNRATESGYWKATGKDKEIYR- 109 79***********************999.88***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++ lvg+kktLvfy grapkgek++Wvmhe+rle MELO3C001996P1 110 GKILVGMKKTLVFYGGRAPKGEKSNWVMHEFRLE 143 99***************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-62	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	56.92	17	167	IPR003441	NAC domain
Pfam	PF02365	7.7E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MEQNIAPPVL EESQIVLPPG FRFHPTDEEL ISHYLCKKVV DSNFCCKPIG EVDLNKSEPW 60 DLPWKAKMGE REWYFFCLRD RKYPTGLRTN RATESGYWKA TGKDKEIYRG KILVGMKKTL 120 VFYGGRAPKG EKSNWVMHEF RLEGKASVIN LPNTAKNEWV ISRVFQKSCG GKKVHISGLV 180 KLGSCSSDLP PLKDSSSSSS SFKIKPVSEL AHVPCFSNTM DSTQRTLPKI NDCSFNFSSF 240 FPTIFPRNTQ PTSLLNPQSI SFPLNLQFQN MARTEGDGRI SVSQETGLTT DINNEISSVV 300 SNVEMGRLPF ENQHNPSAST VPLMNPPMVW NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	13	173	13	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	13	173	13	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	13	173	13	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	13	173	13	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-53	13	173	16	174	NAC domain-containing protein 19
3swm_B	1e-53	13	173	16	174	NAC domain-containing protein 19
3swm_C	1e-53	13	173	16	174	NAC domain-containing protein 19
3swm_D	1e-53	13	173	16	174	NAC domain-containing protein 19
3swp_A	1e-53	13	173	16	174	NAC domain-containing protein 19
3swp_B	1e-53	13	173	16	174	NAC domain-containing protein 19
3swp_C	1e-53	13	173	16	174	NAC domain-containing protein 19
3swp_D	1e-53	13	173	16	174	NAC domain-containing protein 19
4dul_A	1e-53	13	173	13	171	NAC domain-containing protein 19
4dul_B	1e-53	13	173	13	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008444101.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-126	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3B940	0.0	A0A1S3B940_CUCME; NAC domain-containing protein 100-like
STRING	XP_008444101.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-122	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]