PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002016P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 506aa    MW: 56573.8 Da    PI: 8.1091
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002016P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009785103321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C  CgksF ++  L  H++
  MELO3C002016P1  85 CRECGKSFQSWKALFGHMK 103
                     ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.099931IPR007087Zinc finger, C2H2
SMARTSM003550.46931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.32E-7931No hitNo description
PfamPF139127.1E-6932IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.32E-778105No hitNo description
SMARTSM003550.03183105IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07483110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
PfamPF139125.5E-785106IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.221336363IPR007087Zinc finger, C2H2
SMARTSM003550.25336358IPR015880Zinc finger, C2H2-like
PfamPF139121.8E-9336360IPR007087Zinc finger, C2H2
SuperFamilySSF576676.45E-8336358No hitNo description
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
SuperFamilySSF576676.45E-8412439No hitNo description
PfamPF139121.5E-10416440IPR007087Zinc finger, C2H2
SMARTSM003550.26417439IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.286417439IPR007087Zinc finger, C2H2
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEADREFKHF CKLCNRSFPC GRSLGGHMRS HLINSQAETG ENLKKMNLKK AGKFLGDGTS  60
DGYSLRKNPR KTCKLAEFRA EDRFCRECGK SFQSWKALFG HMKCHSTETE RVSSNLEFDS  120
QSDNETAGAN RGKRSRKQTR YMTAEISSSF SFAAAAAAAS SSVSDQNDQE QEEVALCLMM  180
LSRDVGGFYS TTESSDNFMP KQVPSPVAKN HFSKVVEAIP SVYMGQLKEF HSRKLKLSEM  240
DSGCLKFEES NSEFSASAVK MNKNEEKFQQ DDIFGSSSNN QTDINQLQFD SSKFNSDQRK  300
FHELSNGELR SNSFRRSTPN ELNSESYKSK GKRSKFQCNS CNKIFHSYQA LGGHRASHKK  360
AKGCLASKTE NSENSIETEI SNDPTFESKS TATALEVENQ QESEIHMGYE KKNRKHHQCS  420
ICLKIFSSGQ ALGGHKRSHL ISGSESRNKF PETTSNQKPD AEIRDYLDLN LPAPIDEEGS  480
SHLGSMEPWW VGGSHSHEQA LVGLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008448369.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A1S3BJI00.0A0A1S3BJI0_CUCME; zinc finger protein ZAT4-like
STRINGXP_008448369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.19e-27C2H2-like zinc finger protein