PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002055P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 153aa MW: 16939.8 Da PI: 9.0772

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002055P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	115.3	2.6e-36	11	68	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + +cprC+s +tkfCyynny+ sqPr+fCk+CrryWt GG lrnvPvGgg+rk+kk+s MELO3C002055P1 11 KCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGSRKSKKNS 68 578***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	5.0E-31	12	66	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.006	12	66	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-18	13	57	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	14	50	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MDSQSKPDEL KCRCPRCNSL HTKFCYYNNY NYSQPRHFCK TCRRYWTLGG LLRNVPVGGG 60 SRKSKKNSKP KRATFTDSAC NSNSGVIGSD LDMRSSPLKL NQSGDSPWNG REFEAGDPAA 120 EEGFGLDHLA TSSGDSGSSW LKFYGLTHHF NN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	0.0	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	0.0	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445935.1	1e-111	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q9FGD6	6e-29	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A1S3BDV3	1e-109	A0A1S3BDV3_CUCME; dof zinc finger protein DOF3.4-like
STRING	XP_008445935.1	1e-110	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21361	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-25	DOF zinc finger protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]