PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002089P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 250aa    MW: 28125.4 Da    PI: 7.0595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002089P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.32.7e-08163210455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR +iN+++  L++++P +     k +  a +L + ++Y++sLq
  MELO3C002089P1 163 SHSVAERIRRGKINERLRCLQDIVPGC----YKTMGMAVMLDEIINYVQSLQ 210
                     8*************************9....35599999**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-16157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.44E-10157214No hitNo description
PROSITE profilePS5088814.996159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15159221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-5163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-8165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MADFTPNFQS LKPSSFPLMD HIDPNQNPNL NFLDNIPIWF SDSFFNNQTA VPSPRFLENW  60
GENFQGIFSQ ANQIITPISS PVFEPKDPFG NDLHGSIKKR KLENNDAYES SSGNSTPQVS  120
ENGINTKNNN GKGKRSKKGD TYDGDKPREV VHVRARRGQA TDSHSVAERI RRGKINERLR  180
CLQDIVPGCY KTMGMAVMLD EIINYVQSLQ NQVEFLSMKL TAASSYHDFN SDSDAEGKLK  240
GWMDPLYQK*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of brassinosteroid signaling. {ECO:0000269|PubMed:12454087}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269|PubMed:12454087}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458311.11e-180PREDICTED: transcription factor BEE 3-like
SwissprotQ8GWK73e-57BEE3_ARATH; Transcription factor BEE 3
TrEMBLA0A1S3C7K31e-179A0A1S3C7K3_CUCME; transcription factor BEE 3-like
STRINGXP_008458311.11e-179(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.13e-54BR enhanced expression 3
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]