PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002129P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WOX
Protein Properties Length: 390aa    MW: 43935.6 Da    PI: 6.0168
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002129P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49e-2280139357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  MELO3C002129P1  80 SRWNPTPEQLRVLEELYRRgTRTPSADQIQHITSQLrrygKIEGKNVFYWFQNHKARERQ 139
                     7*****************99**************************************97 PP
2Wus_type_Homeobox117.27.7e-3879141365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ+++Leely++G+rtP++++iq+it++L++yGkie+kNVfyWFQN+kaRerqk+
     MELO3C002129P1  79 SSRWNPTPEQLRVLEELYRRGTRTPSADQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKR 141
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.3E-577144IPR001356Homeobox domain
SuperFamilySSF466895.13E-1379145IPR009057Homeodomain-like
PfamPF000462.1E-1980139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-980139IPR009057Homeodomain-like
CDDcd000862.51E-681141No hitNo description
PROSITE profilePS5007111.04685140IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MWMMGYNDAQ DLNFPSDNSF NSRKLRPLIP RPLSSSSSSS HTNDFFSQFH HMATSVADQS  60
KRELNNVLSP SSSPPVVVSS RWNPTPEQLR VLEELYRRGT RTPSADQIQH ITSQLRRYGK  120
IEGKNVFYWF QNHKARERQK RRRQMESSAI TTADHSARDL DVLERKDSGS GRTVYEEQTK  180
NWVPSTNCST LPEESVPIQG AAKGNVMGAT DCRTENGWIQ FEELHQIRNN NTNTNNFAEK  240
DTNNIIIINN NNNNNINNPP SLQLLHCFPA TTALRGGSQL MMNIAPITTT ATVTTIMHPK  300
CHRRSNNINV ISGNFDVIGV EEELEDEEEE EECGESETLQ LFPLCSDRRN GGEIIGGKNN  360
NGCETVENSG MNSTNLTPLQ FFEFLPLKN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016898802.10.0PREDICTED: WUSCHEL-related homeobox 1-like
TrEMBLA0A1S4DS260.0A0A1S4DS26_CUCME; WUSCHEL-related homeobox 1-like
STRINGXP_008463696.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-45WUSCHEL related homeobox 1