PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002328P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 476aa    MW: 52744.8 Da    PI: 4.6853
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002328P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12145167426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C f+++tGtCk+G+ CkF+H+
  MELO3C002328P1 145 EDCAFYLKTGTCKFGSFCKFNHP 167
                     89********************9 PP
2zf-CCCH29.11.7e-09193213525
                     --SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                     +C+f++rtG Ck+G+ C+++H
  MELO3C002328P1 193 ECKFYLRTGGCKFGNACRYNH 213
                     8******************** PP
3zf-CCCH43.26.4e-14236260226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++rtG CkyG++CkF+H+
  MELO3C002328P1 236 DEKECPYYMRTGSCKYGANCKFNHP 260
                     6789********************9 PP
4zf-CCCH24.93.6e-08361387127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++f++tG Ck+ + Ck++H++
  MELO3C002328P1 361 PGQPECSYFLKTGDCKFKSLCKYHHPK 387
                     5789*********************96 PP
5zf-CCCH34.63.2e-11409433327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +  C +++r+G+Ck+G++CkF H++
  MELO3C002328P1 409 QNVCTYYSRYGICKFGPSCKFDHPF 433
                     568********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.23141169IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5141168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6141170IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-10145167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-4147166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.023188216IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4189215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5191216IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-7192213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4194215IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258234262IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-6235261IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7236261IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-11236260IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-6240259IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375360388IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5362387IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6404432IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54406434IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-5406433IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8409433IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-4411431IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEPSEAVSVP NHCEAPPSGF QSSQLHSSVH DPPPFDAQHV TTDDRIHAEL QKLDLKDEKE  60
EPVKDFDDGG EWEVEKNPYE DEGNDTKKID ENDRDRSVRN DDDDGYDDVD EEVDAGDGDG  120
DGGEVERKGD WRGKSNQYPV RPEAEDCAFY LKTGTCKFGS FCKFNHPVRK KNQVVSEKLK  180
YDDDSAGTAN KTECKFYLRT GGCKFGNACR YNHTRSRALT SPILELNFLG LPIRPDEKEC  240
PYYMRTGSCK YGANCKFNHP DPTTVAGSES LSGYNNGVPL QGASQSQITS WTSPRVLNEA  300
TTFVPAMISP SQDSEWNGYQ APIYPSEISV LPPPPYVVNN IAPEADLYSS HQQVDEYPER  360
PGQPECSYFL KTGDCKFKSL CKYHHPKNRN PKLPTCTLND KGLPLRPDQN VCTYYSRYGI  420
CKFGPSCKFD HPFLPTSSTV GELEQQPHYG NFSAAEGAEM AGGASGNSAT VEQSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439243.10.0PREDICTED: zinc finger CCCH domain-containing protein 43
SwissprotQ9STM41e-127C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A1S3AYA60.0A0A1S3AYA6_CUCME; zinc finger CCCH domain-containing protein 43
TrEMBLE5GBX30.0E5GBX3_CUCME; Nucleic acid binding protein
STRINGXP_008439243.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41563361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-128C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]