PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002385P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 496aa    MW: 54334.7 Da    PI: 5.6133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002385P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11366408754
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  MELO3C002385P1 366 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 408
                     79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-16362424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9365408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14365414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-15366420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.96E-13366412No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MLSRVGNVLW MENREDEDSS SWTKNNNDHN HLNHPVNCSV LNNKDEITSL STFKSMLEVE  60
DDWCISANAL HNHNHHTDIN DITFSQNFTD PPDNLLLPPG DSSSSCSPSS SVFNNIDPSQ  120
LRFFLPPTRT LSSLHKVVSN NPLEHGFDLG AEVGFLDVQA SNASTLLNDG GGLLTGFTDL  180
SPTSQMNTPN LCLGSQLTAQ NVAPMGDNCS GLAGFQSFDE NLGNALLLNR SKLLRPLESF  240
PSVGAQPTLF QKRAALRKSL ADKGSNLGVL SPDGGWFSNR IEGGIGKNEM GDENGKKRKM  300
IYADELQDTS IDTSRFNYDS DDFTENTNTK LDESGRNVGN TSNANSTVTG GDQKGKKKGL  360
PAKNLMAERR RRKKLNDRLY MLRSVVPKIS KMDRASILGD AIEYLKELLQ RINDLHNELE  420
FSPSGAALTP GASFHPLTPT PPSLSSRIKE ELCPSSFPSP NGQPARVNKF LILEQLSFAL  480
QMIHDSSILQ LYDLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1355373KKKGLPAKNLMAERRRRKK
2367374ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440093.10.0PREDICTED: transcription factor ICE1-like isoform X1
TrEMBLA0A1S3B0C10.0A0A1S3B0C1_CUCME; transcription factor ICE1-like isoform X1
STRINGXP_008440093.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.44e-57bHLH family protein