PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002600P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LSD
Protein Properties Length: 132aa    MW: 14388.5 Da    PI: 6.2199
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002600P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.13.9e-104266125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Cr lL Y  GA++V+C+ C tV
  MELO3C002600P1 42 CGTCRRLLKYLKGARYVQCSWCSTV 66
                    ***********************99 PP
2zf-LSD1421.6e-1380104125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+sVRC++C  V
  MELO3C002600P1  80 CGSCAVLLMYPYGASSVRCSSCTSV 104
                     **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.7E-143969IPR005735Zinc finger, LSD1-type
PfamPF069435.0E-84266IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.3E-1277106IPR005735Zinc finger, LSD1-type
PfamPF069436.2E-1180104IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPQ PQLSPDMAQM VCGTCRRLLK YLKGARYVQC  60
SWCSTVNFVL EAHEVGQVKC GSCAVLLMYP YGASSVRCSS CTSVTEIGVH NRRPPWSVQQ  120
GQAAPPTNFV Q*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819323e-56LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132663e-56LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442544.15e-94PREDICTED: protein LOL2 isoform X4
SwissprotO654264e-43LOL2_ARATH; Protein LOL2
TrEMBLA0A1S3B6Q21e-92A0A1S3B6Q2_CUCME; protein LOL2 isoform X4
STRINGXP_004163439.11e-79(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-33lsd one like 2