PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002600P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LSD
Protein Properties Length: 133aa    MW: 14459.5 Da    PI: 6.2199
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002600P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD131.13.9e-104367125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    Cg Cr lL Y  GA++V+C+ C tV
  MELO3C002600P2 43 CGTCRRLLKYLKGARYVQCSWCSTV 67
                    ***********************99 PP
2zf-LSD141.91.6e-1381105125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+C +lL+YP+GA+sVRC++C  V
  MELO3C002600P2  81 CGSCAVLLMYPYGASSVRCSSCTSV 105
                     **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.8E-144070IPR005735Zinc finger, LSD1-type
PfamPF069435.1E-84367IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1278107IPR005735Zinc finger, LSD1-type
PfamPF069436.3E-1181105IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPQ PQLSPADMAQ MVCGTCRRLL KYLKGARYVQ  60
CSWCSTVNFV LEAHEVGQVK CGSCAVLLMY PYGASSVRCS SCTSVTEIGV HNRRPPWSVQ  120
QGQAAPPTNF VQ*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819323e-56LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132663e-56LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442535.11e-94PREDICTED: protein LOL2 isoform X3
SwissprotO654263e-42LOL2_ARATH; Protein LOL2
TrEMBLA0A1S3B6K22e-93A0A1S3B6K2_CUCME; protein LOL2 isoform X3
STRINGXP_004163439.15e-78(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-33lsd one like 2