PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002600P3

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

LSD

Protein Properties

Length: 146aa MW: 15979.4 Da PI: 6.4842

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002600P3	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	30.9	4.6e-10	42	66	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg Cr lL Y GA++V+C+ C tV MELO3C002600P3 42 CGTCRRLLKYLKGARYVQCSWCSTV 66 ***********************99 PP
2	zf-LSD1	41.7	1.8e-13	80	104	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GA+sVRC++C V MELO3C002600P3 80 CGSCAVLLMYPYGASSVRCSSCTSV 104 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	7.9E-14	39	69	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	5.9E-8	42	66	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.9E-12	77	106	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	7.3E-11	80	104	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MDVHEIEKDE DDGPPPGWEP ITPSLPLPPQ PQLSPDMAQM VCGTCRRLLK YLKGARYVQC 60 SWCSTVNFVL EAHEVGQVKC GSCAVLLMYP YGASSVRCSS CTSVTEIGIR HGCVETNPSH 120 HSMCRQGPWS RSHFSTVVLF DGIIL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	9e-57	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	9e-57	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008442526.1	1e-105	PREDICTED: protein LOL2 isoform X2
Swissprot	O65426	5e-35	LOL2_ARATH; Protein LOL2
TrEMBL	A0A1S3B6N7	1e-103	A0A1S3B6N7_CUCME; protein LOL2 isoform X2
STRING	XP_008442518.1	3e-91	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-25	lsd one like 2