PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002618P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 130aa    MW: 14076.2 Da    PI: 4.5174
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002618P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.71.5e-2383129248
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     Cq+++C+adls  k+yhrrhkvCe+h+kap+v+v+g+ qrfCqqCsr
  MELO3C002618P1  83 CQADNCNADLSGSKRYHRRHKVCEFHAKAPAVAVAGIDQRFCQQCSR 129
                     **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-2478129IPR004333Transcription factor, SBP-box
PROSITE profilePS5114120.0580129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-2281129IPR004333Transcription factor, SBP-box
PfamPF031103.8E-1883129IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0010321Biological Processregulation of vegetative phase change
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MATGKADGKR RLNYYEMEEE DEEDEEEEEE EDEDEEQEID GGGLGFSGDF NKKKKVLTSG  60
GSSNKKSGSG FGTGPPAAAP PPCQADNCNA DLSGSKRYHR RHKVCEFHAK APAVAVAGID  120
QRFCQQCSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1879129252squamosa promoter-binding protein-like 12
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00290DAPTransfer from AT2G33810Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442764.19e-91PREDICTED: squamosa promoter-binding-like protein 3
TrEMBLA0A1S3B6H62e-89A0A1S3B6H6_CUCME; squamosa promoter-binding-like protein 3
STRINGXP_008442764.14e-90(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.25e-21squamosa promoter binding protein-like 8