PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002636P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TCP
Protein Properties Length: 166aa    MW: 18056.5 Da    PI: 10.4188
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002636P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP90.34.1e-2830116988
             TCP   9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 
                      k++T++g+R RR Rlsa++a++f+dLqd+LG  ++ ++i+WLlq+akpai++l +  ++  ++c          sssss++++s +
  MELO3C002636P1  30 GKVYTSKGLRARRLRLSAPTAIKFYDLQDRLGCGRPTEAIDWLLQNAKPAIDALSRPLQTEDNDCrkqifslPVPSSSSSSQFQSYP 116
                     59*******************************************************777777884333332222222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136922.581683IPR017887Transcription factor TCP subgroup
PfamPF036344.0E-2431122IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MGSLDDHDKK KAKIGRRNRR LCSSAGAGAG KVYTSKGLRA RRLRLSAPTA IKFYDLQDRL  60
GCGRPTEAID WLLQNAKPAI DALSRPLQTE DNDCRKQIFS LPVPSSSSSS QFQSYPLQNF  120
SQKGNLSVFS PMILNVTTAG FSGTQPPCPS QSNVGAGFPF FPMWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-163183254Putative transcription factor PCF6
5zkt_B1e-163183254Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008443015.11e-119PREDICTED: transcription factor TCP10-like
TrEMBLA0A1S3B7T41e-118A0A1S3B7T4_CUCME; transcription factor TCP10-like
STRINGXP_008443015.11e-119(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-19TCP domain protein 10