PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002654P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family Trihelix
Protein Properties Length: 179aa    MW: 19625.8 Da    PI: 8.2444
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002654P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.11.7e-1624114186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+++ + +Li+a  ++  +l+rg+l++++W++v++ +       ++ +r+ +qCk++++ ++k+yk ++++ +  + + +s++p++ +l+
  MELO3C002654P1  24 CWSEDATSTLIDAWGRRFLELNRGNLRQKDWQDVADSVnslhgLTKKTHRTDVQCKNRIDTVKKKYKTERARVSASHGNFVSSWPFYARLD 114
                     7**************************************9999999*************************99999999*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.6E-2622116No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGDLTDSHTP SSANSRQVPI REDCWSEDAT STLIDAWGRR FLELNRGNLR QKDWQDVADS  60
VNSLHGLTKK THRTDVQCKN RIDTVKKKYK TERARVSASH GNFVSSWPFY ARLDELIGPT  120
VSMKKPSSPP LALPLPFHVS FRRNYSAAAA AAAAVALSEE EEDEIVGGGG GGGESERR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016899611.11e-101PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL2-like
SwissprotQ9LJG81e-32ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1S4DUF01e-100A0A1S4DUF0_CUCME; LOW QUALITY PROTEIN: trihelix transcription factor ASIL2-like
STRINGXP_008443285.11e-99(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-41sequence-specific DNA binding transcription factors