PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C002691P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

MIKC_MADS

Protein Properties

Length: 257aa MW: 29028.4 Da PI: 9.4334

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C002691P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.2	1.7e-31	33	82	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ MELO3C002691P1 33 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 82 79***********************************************8 PP
2	K-box	110.6	1.6e-36	102	197	5	100
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + s++ea+++ +qqe+akL+++i nLq+ +RhllGe+++sLs+k+L++Le +Lek+l++iRs+Knell+++ie++qk+e el+ +n+ +r+k++ MELO3C002691P1 102 TAMSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIA 196 455699***************************************************************************************98 PP K-box 100 e 100 e MELO3C002691P1 197 E 197 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.375	25	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.9E-41	25	84	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.37E-33	26	98	IPR002100	Transcription factor, MADS-box
CDD	cd00265	8.42E-43	26	95	No hit	No description
PRINTS	PR00404	4.9E-33	27	47	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	27	81	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.8E-27	34	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-33	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.9E-33	62	83	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.7E-26	108	195	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.899	111	201	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSCYEEEDEE SGVVGLRKSS SSSRTGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS 60 VLCDAEVALI VFSSRGRLYE YANNSVRATI SRYKKAYSDP STAMSVSEAN TQFYQQESAK 120 LRAQIGNLQN LNRHLLGESI SSLSVKDLKS LEVKLEKGLS RIRSRKNELL FSEIEYMQKR 180 EIELHTNNQL IRAKIAETER SQQNRNASNN GIAATGGRGD EGSMATNLEV NNHHHQYDST 240 NYFDPHHNHP ISLQLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
1tqe_R	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
1tqe_S	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6byy_A	1e-21	26	100	2	75	MEF2 CHIMERA
6byy_B	1e-21	26	100	2	75	MEF2 CHIMERA
6byy_C	1e-21	26	100	2	75	MEF2 CHIMERA
6byy_D	1e-21	26	100	2	75	MEF2 CHIMERA
6c9l_A	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6c9l_B	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6c9l_C	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6c9l_D	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6c9l_E	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
6c9l_F	9e-22	26	100	2	75	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	X97801	0.0	X97801.1 C.sativus CUS1 mRNA for put. transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008443694.1	0.0	PREDICTED: floral homeotic protein AGAMOUS-like
Swissprot	Q43585	1e-103	AG_TOBAC; Floral homeotic protein AGAMOUS
TrEMBL	A0A1S3B8P7	0.0	A0A1S3B8P7_CUCME; floral homeotic protein AGAMOUS-like
STRING	XP_008443688.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF684	29	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	2e-92	MIKC_MADS family protein

Publications ? help Back to Top
Cheung AY,Zhan XY,Wang H,Wu HM Organ-specific and Agamous-regulated expression and glycosylation of a pollen tube growth-promoting protein. Proc. Natl. Acad. Sci. U.S.A., 1996. 93(9): p. 3853-8 [PMID:8632979]