PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C002947P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 169aa    MW: 19388.7 Da    PI: 10.0783
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C002947P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000217799123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    + C++C k F+++  L  H++ H
  MELO3C002947P1 77 FHCQYCLKEFTNSQALGGHQNAH 99
                    78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.6E-675104No hitNo description
Gene3DG3DSA:3.30.160.600.00176103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09477104IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDKSFSFDFL SSQNKPLRLF GIELINNVPP ALLEEKEESR RANHSSSSSS SSSSITRRLC  60
GNLDDRPMRN VKTRTLFHCQ YCLKEFTNSQ ALGGHQNAHK KERLKQKRLQ IEAQKSSLRR  120
YLQNYFNSHF SHEFDGSHIS FTFRTSNDFS VAASDPASAP EFRLFPFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143824.15e-90PREDICTED: zinc finger protein 5
TrEMBLA0A0A0KNG03e-62A0A0A0KNG0_CUCSA; Uncharacterized protein
STRINGXP_008465725.11e-120(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95942635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.19e-12zinc finger protein 5