PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003009P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 214aa    MW: 24380.6 Da    PI: 8.6806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003009P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-053756120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    ++C+ C+k+F+r  n++ H+
  MELO3C003009P1 37 FSCSVCTKTFNRYNNMQMHM 56
                    89*****************9 PP
2zf-C2H217.51.1e-05122144123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C +CgksF  + + ++H +++
  MELO3C003009P1 122 FSCRKCGKSFAVRGDWRTHEKNC 144
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-53360No hitNo description
PROSITE profilePS5015710.5123764IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-53756IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.243759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SMARTSM0035522085117IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.23E-6105142No hitNo description
Gene3DG3DSA:3.30.160.603.7E-6108142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.912122142IPR007087Zinc finger, C2H2
SMARTSM0035534122142IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MHIGPPPALI SSAPSAVRPL DYWIPTPAQI LVGPTQFSCS VCTKTFNRYN NMQMHMWGHG  60
SEYRKGPESL RGSKAASSML RVPCYCCAEG CKNNIEHPRS RPLKDFRTLQ THYKRKHGAK  120
PFSCRKCGKS FAVRGDWRTH EKNCGKLWFC ICGSDFKHKR SLKDHVRAFG DGHAPHTVQL  180
CEVEDDNDDD EWESDHHHHQ HLNGSPQTWS IYH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465836.11e-163PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-106ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A1S3CR841e-161A0A1S3CR84_CUCME; zinc finger protein WIP6-like
STRINGXP_008465836.11e-162(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-106C2H2-like zinc finger protein