PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003044P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 428aa MW: 46664.4 Da PI: 9.598

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003044P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00025	194	216	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +++L+ H+ + H MELO3C003044P1 194 PCPQCGEIFMKPETLELHQTVrH 216 7******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	193	216	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.621	193	221	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	8.73E-26	218	425	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.1E-18	219	424	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MASAMAKPKT QRKLSRHTHE NQKPNPQKAE KPPSWAVVRG ILSCKYLQPQ QQQHQLPRKE 60 KQEQATEENG KNCKKMRCSG SLCSNTKVTH RLEAAASPEV HKKRVLTSMG SRNNESSSSN 120 RSTKTLVLNE QTTGVLSATS SSLSASSSSS NSSNGASFRG MPFRRFYGCY ECKMVIDPVI 180 GMTRDPSLRA TICPCPQCGE IFMKPETLEL HQTVRHAVSE LGPEDTSKNI VEIIFQSSWL 240 KKQTPICKIE RILKVQNTPK TISKFEEYRD SIKAKATKLP KKYPRCIADG NELLRFHCTT 300 LNCSLGFNGS SNLCSSIPQC NVCSIIKNGF KVAAEATGGD SGKGILTTAT SGKAHDSVGV 360 SSDGGDDKRA MLVCRVIAGR VKKSPEGSME DYDSLAGAAG MYSNLDELYV FSPKAILPCF 420 VVIYGGF*

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MASAMAKPKT QRKLSRHTHE NQKPNPQKAE KPPSWAVVRG ILSCKYLQPQ QQQHQLPRKE  60
KQEQATEENG KNCKKMRCSG SLCSNTKVTH RLEAAASPEV HKKRVLTSMG SRNNESSSSN  120
RSTKTLVLNE QTTGVLSATS SSLSASSSSS NSSNGASFRG MPFRRFYGCY ECKMVIDPVI  180
GMTRDPSLRA TICPCPQCGE IFMKPETLEL HQTVRHAVSE LGPEDTSKNI VEIIFQSSWL  240
KKQTPICKIE RILKVQNTPK TISKFEEYRD SIKAKATKLP KKYPRCIADG NELLRFHCTT  300
LNCSLGFNGS SNLCSSIPQC NVCSIIKNGF KVAAEATGGD SGKGILTTAT SGKAHDSVGV  360
SSDGGDDKRA MLVCRVIAGR VKKSPEGSME DYDSLAGAAG MYSNLDELYV FSPKAILPCF  420
VVIYGGF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008465804.1	0.0	PREDICTED: uncharacterized protein LOC103503399
TrEMBL	A0A1S3CQ33	0.0	A0A1S3CQ33_CUCME; uncharacterized protein LOC103503399
STRING	XP_008465804.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8473	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-99	C2H2-like zinc finger protein