PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003390P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 283aa    MW: 32383.2 Da    PI: 6.2496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003390P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.93e-3027257128
             NAM  57 ewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ew+fF++rd+ky++g+r+nratk+gyWkatgkd+++ + +++++g +ktLvfy+grap g + dWvmheyrl
  MELO3C003390P1   2 EWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKINC-QSSVMGYRKTLVFYRGRAPLGDRMDWVMHEYRL 72 
                     8*************************************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100537.565195IPR003441NAC domain
SuperFamilySSF1019411.03E-35295IPR003441NAC domain
PfamPF023652.8E-15372IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEWFFFCPRD RKYPNGSRTN RATKAGYWKA TGKDRKINCQ SSVMGYRKTL VFYRGRAPLG  60
DRMDWVMHEY RLCDDFSHGT PNFKGAFALC RIVKKNEMKK DNHREPKGNV VGSSQASEDS  120
TSTRIEVANE LSNILEDNLS QSNIFLTNES RLSSPMTTLY DTNPMSRYST TIMETDPEKI  180
WISPDLILDS SKDYPEMQGA MSMCFPQYEY SGSTIPWQSH EHTEISPSSS YSNCTGDIEL  240
EDNLNQIGGC ISPYSTHLNY MQLNINEQGL DLKNSQKYPN YF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2829672166NO APICAL MERISTEM PROTEIN
1ut4_B1e-2829672166NO APICAL MERISTEM PROTEIN
1ut7_A1e-2829672166NO APICAL MERISTEM PROTEIN
1ut7_B1e-2829672166NO APICAL MERISTEM PROTEIN
3swm_A1e-2829675169NAC domain-containing protein 19
3swm_B1e-2829675169NAC domain-containing protein 19
3swm_C1e-2829675169NAC domain-containing protein 19
3swm_D1e-2829675169NAC domain-containing protein 19
3swp_A1e-2829675169NAC domain-containing protein 19
3swp_B1e-2829675169NAC domain-containing protein 19
3swp_C1e-2829675169NAC domain-containing protein 19
3swp_D1e-2829675169NAC domain-containing protein 19
4dul_A1e-2829672166NAC domain-containing protein 19
4dul_B1e-2829672166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016903511.10.0PREDICTED: protein NTM1-like 9 isoform X2
SwissprotO496975e-64NAC71_ARATH; NAC domain-containing protein 71
TrEMBLA0A1S4E5J90.0A0A1S4E5J9_CUCME; protein NTM1-like 9 isoform X2
STRINGXP_008465949.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-66NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]