PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003401P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 261aa    MW: 28420.1 Da    PI: 6.5052
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003401P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-056991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C + F++   L  H+++H
  MELO3C003401P1 69 YTCTYCRREFRSAQALGGHMNVH 91
                    9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.47E-66696No hitNo description
PROSITE profilePS5015711.3446996IPR007087Zinc finger, C2H2
SMARTSM003550.00576991IPR015880Zinc finger, C2H2-like
PfamPF139128.0E-76992IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAAELVLGFQ YSSSLPHLSE TTRDGQNPNG VNPMQTPDVV VDDDDSWEVR AFAEDTANVM  60
GTTWPPRSYT CTYCRREFRS AQALGGHMNV HRRDRARLHH QAPSSSSNPM KPSSTSSSNS  120
NSFIIPTPDF NGGGSLCLLY QFPNPNSING GINTSPSTLN AYIHSPSSLF SMPHHSFNTY  180
PSSTSLSAAF PMNDNNHRRL ETSTYSASME NNNGSSQDEV LDLELRLGHG PPSSTQNLME  240
KGEKKVSNSE AACLKKRSSD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A7e-136491229superman protein
2l1o_A7e-136491229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465962.10.0PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S3CRJ10.0A0A1S3CRJ1_CUCME; transcriptional regulator SUPERMAN-like
STRINGXP_008465962.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-32C2H2 family protein