PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003423P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 349aa    MW: 37969.7 Da    PI: 7.5182
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003423P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.29.5e-0688112126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+lC+ f++ GtC+y  +C+F H+
  MELO3C003423P1  88 FKTKLCCKFRA-GTCPYITNCNFGHS 112
                     69*********.***********886 PP
2zf-CCCH18.73.1e-06162187126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  MELO3C003423P1 162 YKGRHCKKFYTEEGCPYGDSCTFLHD 187
                     78888********************7 PP
3zf-CCCH41.81.8e-13229254126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  MELO3C003423P1 229 WKTRICNKWELTGYCPFGNKCHFAHG 254
                     8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-1285120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-785118IPR000571Zinc finger, CCCH-type
SMARTSM003560.3887113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.39487114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-9160189IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7160189IPR000571Zinc finger, CCCH-type
SMARTSM003560.086161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098161189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-17224258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-10225259IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-9228255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.225228256IPR000571Zinc finger, CCCH-type
PfamPF006429.9E-11229254IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDYSGGNVVH VISGTSSENW PGEVWATEDE YRAWNNGGDG SVDTPSNSSY DQRQSQSRSG  60
SEPPNKKSRS SQDVTSSNRS KAIGKMFFKT KLCCKFRAGT CPYITNCNFG HSIEELRRPP  120
HNWQEIVAAH EEEKAVLSEP REEFQIPSLG TSNFGSESQR SYKGRHCKKF YTEEGCPYGD  180
SCTFLHDEQS KNRESVAISL GPGGYSGGGG GGGGGGGSGN GSNTKPSNWK TRICNKWELT  240
GYCPFGNKCH FAHGAAELHR YGGGLMETET RDSSAAPPDP KQGVLPKAPG DTLVASVPSV  300
PHSDVYHVVV PSQRSTIVIQ RPGQRTHQKW KGPDKISRIY GDWIDDIE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205217SGGGGGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818240.0LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008465989.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ9LQM31e-129C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A1S3CQH80.0A0A1S3CQH8_CUCME; zinc finger CCCH domain-containing protein 12 isoform X2
STRINGXP_008465987.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-130C3H family protein