PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003757P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 424aa MW: 45878 Da PI: 9.672

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003757P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	175	197	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg++F+ ++L+ H+ + H MELO3C003757P1 175 SCPQCGEVFPKIESLELHQLVrH 197 8******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.663	174	202	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	174	197	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-21	199	419	No hit	No description
Gene3D	G3DSA:3.90.228.10	8.7E-12	201	419	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MALLTNSFQD HKKPLPNKRR KKHPNPTPSP SSAQSSWDHI KNLITCKQVE VSRVQEQGKR 60 SPAYSKLGSS CSSICSFRDV VHGNAKVVHR ADNSPESSSV GQETRLLTRK SANGSSSRSL 120 TAPAPARTKN GGSGSASYNS SSSRGIQLRK LSGCYECHTI VDPSRFPIPR SSICSCPQCG 180 EVFPKIESLE LHQLVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDRPICKI ERILKVHNTQ 240 RTIQRFEDCR DAVKTRALGS SRKNPRCAAD GNELLRFHCS ALLCDLGSRG STGLCGSIPG 300 CGVCTVIRHG FQCKPGGPPG VRTTASSGRA HDSFECGDGR RRAMLVCRVI AGRVKRISED 360 AGTGTTTTAT DQEENVVTAA AVAASYDSVS RHSGMYSNLE ELVIFNPKAI LPCFVVIYEA 420 LQN*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MALLTNSFQD HKKPLPNKRR KKHPNPTPSP SSAQSSWDHI KNLITCKQVE VSRVQEQGKR  60
SPAYSKLGSS CSSICSFRDV VHGNAKVVHR ADNSPESSSV GQETRLLTRK SANGSSSRSL  120
TAPAPARTKN GGSGSASYNS SSSRGIQLRK LSGCYECHTI VDPSRFPIPR SSICSCPQCG  180
EVFPKIESLE LHQLVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDRPICKI ERILKVHNTQ  240
RTIQRFEDCR DAVKTRALGS SRKNPRCAAD GNELLRFHCS ALLCDLGSRG STGLCGSIPG  300
CGVCTVIRHG FQCKPGGPPG VRTTASSGRA HDSFECGDGR RRAMLVCRVI AGRVKRISED  360
AGTGTTTTAT DQEENVVTAA AVAASYDSVS RHSGMYSNLE ELVIFNPKAI LPCFVVIYEA  420
LQN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	0.0	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466489.1	0.0	PREDICTED: uncharacterized protein LOC103503882
TrEMBL	A0A1S3CSN6	0.0	A0A1S3CSN6_CUCME; uncharacterized protein LOC103503882
STRING	XP_008466489.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10341	30	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-160	C2H2-like zinc finger protein