PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C003797P3

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 144aa MW: 15285.4 Da PI: 9.8935

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C003797P3	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	28	66	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq MELO3C003797P3 28 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 66 7788999*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	16	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.70E-6	26	70	No hit	No description
SuperFamily	SSF47459	1.27E-11	26	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.7E-10	30	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MESRLNQQSP LKKSRLDSRA SCPPFKVRKE KLGDRIAALQ QLVAPFGKTD TASVLMEAIG 60 YIKFLQNQVE TLSVPYMKPA GSNKAPQPTH RSSVEDGNEG GQNRDLRSRG LCLVPLGCLS 120 YVTGDGGGGV GIWPPPGFNG GTS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681824	1e-83	LN681824.1 Cucumis melo genomic scaffold, anchoredscaffold01596.
GenBank	LN713258	1e-83	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008466525.1	1e-99	PREDICTED: transcription factor bHLH110-like isoform X1
Refseq	XP_008466527.1	1e-100	PREDICTED: transcription factor bHLH110-like isoform X3
Swissprot	Q9SFZ3	1e-49	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1S3CRG7	1e-98	A0A1S3CRG7_CUCME; transcription factor bHLH110-like isoform X3
TrEMBL	A0A1S3CSR9	3e-98	A0A1S3CSR9_CUCME; transcription factor bHLH110-like isoform X1
STRING	XP_008466525.1	5e-99	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	6e-49	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]