PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C003968P2
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 249aa    MW: 28624.3 Da    PI: 4.9146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C003968P2genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-1358100754
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L
  MELO3C003968P2  58 LSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQEL 100
                     57*********************7.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1951100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-1254104No hitNo description
SuperFamilySSF474591.44E-1656115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-1457106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1657115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1058100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MENILDEYRY YWETNMFLQT EEFDRNFSWG LDEAFYGSYD SSSPDGTMSS LEASKNILSE  60
RNRRKKLNDR LLALRAVVPN ITKMDKASII KDAIEYIQEL RSEENRIETE ISNLESGKFK  120
STTSNEDDDR ENNNRNTRKR GTKNSNRQLR EKPTSFPIEI LDLNVSYMGE KTMVVSMTCE  180
RRNDAVLKIC QVIESLKLKI ITANITVVAN RLLSTLFLEA ERAEEEELKI KLGKAIAAIS  240
DQQNPISI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-1448110163Transcription factor MYC2
5gnj_B6e-1448110163Transcription factor MYC2
5gnj_E6e-1448110163Transcription factor MYC2
5gnj_F6e-1448110163Transcription factor MYC2
5gnj_G6e-1448110163Transcription factor MYC2
5gnj_I6e-1448110163Transcription factor MYC2
5gnj_M6e-1448110163Transcription factor MYC2
5gnj_N6e-1448110163Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-129LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-129LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008451126.11e-180PREDICTED: transcription factor bHLH35-like isoform X1
SwissprotQ2HIV96e-78BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3BQS91e-179A0A1S3BQS9_CUCME; transcription factor bHLH35-like isoform X1
STRINGXP_008451126.11e-180(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-57bHLH family protein