PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004050P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

CO-like

Protein Properties

Length: 323aa MW: 35465.9 Da PI: 8.0149

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004050P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	20	1.4e-06	16	54	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.....H 37 ++ C +++ + lfC+ + +lC C ++H H MELO3C004050P1 16 KPLCYSCKSATAVLFCRHDTAFLCLRCDAQIH-TlsgtrH 54 578*****************************.3344556 PP
2	zf-B_box	24.9	4.3e-08	57	99	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 + C+ +e+ ++++ C+ + lC +C +H + H++ MELO3C004050P1 57 VWLCEVCEQAPATITCNADAAALCTSCDADIH-SvnplarrHDR 99 689*****************************.33566666765 PP
3	CCT	69.5	8.9e-24	247	291	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eK+k+RkFeK+irY+sRKa+Ae RpRvKGrFvk++e MELO3C004050P1 247 REARVLRYREKKKNRKFEKTIRYASRKAYAEIRPRVKGRFVKRSE 291 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.057	14	49	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.428	14	59	IPR000315	B-box-type zinc finger
CDD	cd00021	1.92E-7	17	59	No hit	No description
PROSITE profile	PS50119	9.584	55	102	IPR000315	B-box-type zinc finger
SMART	SM00336	9.3E-12	55	102	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.8E-6	57	100	IPR000315	B-box-type zinc finger
CDD	cd00021	3.18E-5	58	89	No hit	No description
PROSITE profile	PS51017	16.479	247	289	IPR010402	CCT domain
Pfam	PF06203	9.4E-18	247	289	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MHSFAAAWSG VPAATKPLCY SCKSATAVLF CRHDTAFLCL RCDAQIHTLS GTRHPRVWLC 60 EVCEQAPATI TCNADAAALC TSCDADIHSV NPLARRHDRS AIQPFYDSPP SSSVASVFKF 120 LIPTQHQHDA VQPDLKSEDI FFSDMDSLID FDYPTAGDGV VPEQSNPGTE STTPPTDYST 180 RNLSGFQLCS TRSKPDAMSY PSQNLSHSVS SSSLDVGVVP DRNTASDASF PMGQLAEKAV 240 QLRGMDREAR VLRYREKKKN RKFEKTIRYA SRKAYAEIRP RVKGRFVKRS ETNCEIERFY 300 GSAGVGFMVG DGQYGVVPSL RV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008451877.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
Swissprot	Q9FHH8	4e-82	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A1S3BTB5	0.0	A0A1S3BTB5_CUCME; zinc finger protein CONSTANS-LIKE 5-like
STRING	XP_008451877.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24867	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	2e-80	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]