PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004493P3

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

YABBY

Protein Properties

Length: 144aa MW: 16215 Da PI: 10.4167

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004493P3	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	134.2	1.6e-41	27	117	81	170
YABBY 81 nlksnvekeesastsvssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +++s+s+++ + + +n +++ + ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl MELO3C004493P3 27 HYRVELGSSSSKSNTKMK--MrapIKNPTNDHHDQRLINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGL 117 333333333322222222..122334444444444569*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.1E-41	8	117	IPR006780	YABBY protein
SuperFamily	SSF47095	5.76E-8	61	110	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.5E-4	66	109	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MAAAFQSLSW QNSQASNHSH SGSGGDHYRV ELGSSSSKSN TKMKMRAPIK NPTNDHHDQR 60 LINRPPEKRQ RVPSAYNQFI KEEIQRIKAT NPDITHREAF STAAKNWAHF PHIHFGLMLD 120 TNNLQTKNDG SEKHLMSVSG LHY*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	1e-80	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	1e-80	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008457474.1	1e-104	PREDICTED: axial regulator YABBY 5
Swissprot	Q8GW46	5e-47	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3C5K6	1e-103	A0A1S3C5K6_CUCME; axial regulator YABBY 5
STRING	XP_008457474.1	1e-104	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	2e-42	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]