PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004566P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family CPP
Protein Properties Length: 239aa    MW: 26549.4 Da    PI: 8.6439
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004566P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.81.2e-141756242
             TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                    ++k+CnCk+s+Clk+YCeCfa+g +C+  C+C +C N+ e+
  MELO3C004566P1 17 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCINCYNNVEN 56
                    89**************************.********9875 PP
2TCR52.68.8e-17101140140
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                     k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  MELO3C004566P1 101 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 140
                     589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-161656IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.5717141IPR005172CRC domain
PfamPF036381.0E-111853IPR005172CRC domain
SMARTSM011148.4E-20101142IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.3E-13104139IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSRARPAMEA KDSTPKKQKQ CNCKHSRCLK LYCECFASGI YCDGCNCINC YNNVENDAAR  60
REAVEATLER NPNAFRPKIA SSPHGMRDSR EEAGELLMLG KHNKGCHCKK SGCLKKYCEC  120
FQANILCSEN CKCMDCKNFE GSEERQALFH GDHGSNMTFI QQAANAAITG AIGSSGYASP  180
PVSKKRKGQE LYFGPTAKDI STHRPGPFQQ VDLIIYYKYK TTSCINLVES LRQKKITL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-3491502132Protein lin-54 homolog
5fd3_B2e-3491502132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00269DAPTransfer from AT2G20110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008458483.11e-159PREDICTED: protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SL701e-116TCX6_ARATH; Protein tesmin/TSO1-like CXC 6
TrEMBLA0A1S3C8J31e-157A0A1S3C8J3_CUCME; protein tesmin/TSO1-like CXC 5 isoform X2
STRINGXP_008458475.11e-157(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.11e-118Tesmin/TSO1-like CXC domain-containing protein