PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004610P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C3H
Protein Properties Length: 397aa    MW: 43662 Da    PI: 7.9282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004610P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-06145165526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C +f++ G C  Gd C FaHg
  MELO3C004610P1 145 ACADFRK-GSCVKGDACEFAHG 165
                     799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.145140167IPR000571Zinc finger, CCCH-type
SMARTSM003560.0063140166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5145167IPR000571Zinc finger, CCCH-type
SMARTSM0035614175198IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643175199IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MIVGEQPKRT NPTVQIPPWT FLEDTGMDVY SHSSPGSGGS SGSVKCDGCS SGGGYSPYYL  60
QEALAMLKRY LPSNEAEMDS DIDVSGKEMD SPVDAYSSDQ FRMYEFKIKK CTRGRSHDWT  120
ECPFAHPGEK ARRRDPRRYY YSGTACADFR KGSCVKGDAC EFAHGVFECW LHPARYRTQP  180
CKDGTSCRRR VCFFAHTPEQ LRVLPQQSPR STTSIPSYDG SPLRQAIEAC AKQMPYLSSP  240
GTSPPVSPRI ESPPQSPIIK SLNRPHAPSS INEMIASLRN LQLNKELCKV QSPSSSSSWN  300
VQVGSPVFGS PKDSTTRSGL PSLPETSTPP GIRYLDFWEL GIGEEPAMER VESGRDLRAK  360
MFEKLRKENS VGCGDQDKNS GGAGGLDVGW ISELLK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008459142.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-124C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1S3C9K70.0A0A1S3C9K7_CUCME; zinc finger CCCH domain-containing protein 20-like
STRINGXP_008459142.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-122C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]