PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C004694P1

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 239aa MW: 27718.5 Da PI: 6.2598

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C004694P1	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.2	3.5e-45	16	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGfrF Pt+eel+++yL ++++++ e+++vi+ ++iy+++PwdLpk +k+++++w+fF++r++++a+g r++r+t++gyWkatg+ v MELO3C004694P1 16 PPGFRFYPTEEELLSFYLPHQLQTQLPEMHRVIPLLNIYDFDPWDLPKfageLCKGDNEQWFFFVPRQEREARGGRPSRTTAAGYWKATGSPVYV 110 9**************************99************656765556778******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ ++++glkkt+vfykgrap+g+kt+W mheyr+ MELO3C004694P1 111 YSSASKVIGLKKTMVFYKGRAPTGTKTKWKMHEYRA 146 ********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-50	12	163	IPR003441	NAC domain
PROSITE profile	PS51005	49.826	15	165	IPR003441	NAC domain
Pfam	PF02365	2.5E-23	16	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MAMQEEEEEE SIHEYPPGFR FYPTEEELLS FYLPHQLQTQ LPEMHRVIPL LNIYDFDPWD 60 LPKFAGELCK GDNEQWFFFV PRQEREARGG RPSRTTAAGY WKATGSPVYV YSSASKVIGL 120 KKTMVFYKGR APTGTKTKWK MHEYRAIDDS AKLRHEFSLC RVYVISGCFR AFDRRPMEVI 180 AAARKNADPK MKGKVTSPEI SCSAAAMVHC DGSGSNWRMD EDEKFEESIW EWEKMDWP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-35	1	163	4	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-35	1	163	4	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-35	1	163	4	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-35	1	163	4	163	NO APICAL MERISTEM PROTEIN
3swm_A	4e-35	1	163	7	166	NAC domain-containing protein 19
3swm_B	4e-35	1	163	7	166	NAC domain-containing protein 19
3swm_C	4e-35	1	163	7	166	NAC domain-containing protein 19
3swm_D	4e-35	1	163	7	166	NAC domain-containing protein 19
3swp_A	4e-35	1	163	7	166	NAC domain-containing protein 19
3swp_B	4e-35	1	163	7	166	NAC domain-containing protein 19
3swp_C	4e-35	1	163	7	166	NAC domain-containing protein 19
3swp_D	4e-35	1	163	7	166	NAC domain-containing protein 19
4dul_A	3e-35	1	163	4	163	NAC domain-containing protein 19
4dul_B	3e-35	1	163	4	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681928	1e-148	LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBank	LN713266	1e-148	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008461272.1	1e-180	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	3e-80	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3CEB6	1e-179	A0A1S3CEB6_CUCME; NAC domain-containing protein 90-like
STRING	XP_008461272.1	1e-179	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF871	34	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-82	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]