PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004740P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 326aa    MW: 36830.7 Da    PI: 7.9051
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004740P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.1e-05168187120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C +C+ksF+r  n++ H+
  MELO3C004740P1 168 FACAICNKSFNRYNNMQMHM 187
                     78*****************9 PP
2zf-C2H211.20.0012252274123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgks   k + ++H +++
  MELO3C004740P1 252 FMCRKCGKSLAVKGDWRTHEKNC 274
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.64E-5159191No hitNo description
PROSITE profilePS5015710.679168195IPR007087Zinc finger, C2H2
SMARTSM003550.47168190IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.8E-6168187IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SMARTSM00355190215247IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.2E-4248272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355110252272IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MGLRNHMAEE NIFCLQSPTF IEWLKPHNPS SSSPTSISLS CSSSCSSDRD LISQTSVQCV  60
PGRCLPLFTE TEASAKKDEE ETRAEDGERK YMDVKEEDED MEKVEVGLHI GLPNVGDVSN  120
VFGDEKNMNV CVKKEEINSL KKSFSNFNTQ GRFWIPTQAQ ILVGPMQFAC AICNKSFNRY  180
NNMQMHMWGH GSEYRKGPES LRGTQPAAML RLPCYCCAQG CKNNINHPRA KPLKDFRTLQ  240
THYKRKHGCK PFMCRKCGKS LAVKGDWRTH EKNCGKLWYC CCGSDFKHKR SLKDHIRSFG  300
KGHSPCSSLD DECLTGSDDQ EDHFS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008461629.10.0PREDICTED: zinc finger protein WIP3
SwissprotQ9SGD11e-109ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S3CF210.0A0A1S3CF21_CUCME; zinc finger protein WIP3
STRINGXP_008461629.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-104WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]