PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004869P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 377aa    MW: 42399.8 Da    PI: 9.2445
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004869P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.21.8e-07211233123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F+r  nL+ H+r H
  MELO3C004869P1 211 HYCQICGKGFKRDANLRMHMRAH 233
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.45E-6209236No hitNo description
PROSITE profilePS5015712.632211238IPR007087Zinc finger, C2H2
SMARTSM003550.0028211233IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.1E-6211237IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF128740.0025212231No hitNo description
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
SMARTSM0035593264297IPR015880Zinc finger, C2H2-like
SMARTSM0035517302324IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MISNSQMLSL PSQHHPLVSS SNDHHETLDN LLSSYSQSSN TLLYNLSILK EKLHQIQSVV  60
NIAVYNLENS RESLPSAPAS SQSPVATAAV NSLIQELIMA ASSMLFTCQQ MDNLVVNASL  120
PNNNVGNILQ GQHHQRQGPV DDNNGRSNTL FDMANNHHHQ RQDWYNLTTS NNYNDNNNNG  180
RTLTTKTTQD HRNSINIVEL DASDLLAKYT HYCQICGKGF KRDANLRMHM RAHGDEYKAS  240
GALSNPEKSH RKDLNNISKM GIKYSCPQEG CRWNQKHVKF QPLKSLICVK NHFKRTHCPK  300
MYVCKLCSRK KFSVLSDLRT HEKHCGDVKW LCSCGTTFSR KDKLMGHVAL FIGHAPAIGS  360
STKFSGKQEH QYVHSF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462505.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1
SwissprotQ0WT241e-111STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S3CH280.0A0A1S3CH28_CUCME; protein SENSITIVE TO PROTON RHIZOTOXICITY 1
STRINGXP_008462505.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80993045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-105C2H2 family protein