PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004927P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 793aa    MW: 88690.6 Da    PI: 6.5682
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004927P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-095896261954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yp+ +++  LA+++gL+ +qV++WF N R +
  MELO3C004927P1 589 FEHflHPYPTDTDKHMLATQTGLSRNQVSNWFINARVR 626
                     564459******************************87 PP
2BELL114.45.7e-37446514472
            BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     e q+kkakLl +leeV++rYkqy++q+q+v+ssFe vagl sa+pY+slAlk++SrhFr+Lk+ai+eq+
  MELO3C004927P1 446 EYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQL 514
                     88*****************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-52379512IPR006563POX domain
PfamPF075269.8E-43384511IPR006563POX domain
PROSITE profilePS5007112.147567630IPR001356Homeobox domain
CDDcd000864.46E-11570631No hitNo description
SMARTSM003891.8E-8570634IPR001356Homeobox domain
SuperFamilySSF466897.7E-17571636IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27573634IPR009057Homeodomain-like
PfamPF059203.7E-18587626IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 793 aa     Download sequence    Send to blast
MEHSYGFEQH VAQQSRRDKL RVPQNYLRVG EVSRNSDEQL SFHNSEHSGV DLDIVRIQSF  60
NKDAILPHDH SSLLPSEMIN FSRDSNVLSN QRDMMLRQEL EDPAQCSRQI VTDNSIDYWK  120
SSHQSCDWVV NCGSNSFGGE MLNQEVTDST VYSLKPTCIG FPTSSSFNNT SNQTFNQDGQ  180
KRIVGELHLP PIYQNTLQDV VTSASIRTQG LEMTSIVQHN FTEINQTAAC EGSANELALL  240
PVYRDQPNVL PYDSTGSWTD RTYYNCRSWI GELGSIARKT DEELRSFMSD SNPQGLALSL  300
SSNPPSKLPT TQFEESEDLQ ESITVLKNSQ ESKTIKSENL CRLPKPTSIG TKNYGKSLQD  360
VMGVPVNPYR NTGPLGPFTG YATILKSSKF LKPAQLLLDE FCGSNGHRNE VVKESSSCAD  420
ASTFCGSNES NISGVGSISS ESHQPEYQQK KAKLLYMLEE VCRRYKQYHQ QMQMVVSSFE  480
SVAGLSSATP YISLALKTVS RHFRSLKNAI SEQLKYLRKV LGEDLSSPSA GTSGSKGDAN  540
STRLKYMEQS FQKHKSGIVN IGFLESQNAW RPQRGLPERA VAILRAWLFE HFLHPYPTDT  600
DKHMLATQTG LSRNQVSNWF INARVRVWKP MVEEIHMLET KGMEETNNRS HGTRDGSSTL  660
ENTAGWTSNE HQPLKNQGVV NEMSSHHLQC FGVDSTSGDQ NGLGSSAQQW DQGKQSKLDN  720
GIQSNMEREL MGFMPYQASA AEVGGLGAVS LTLGLRHRVE SAHHQQQRHQ LQQQDDQLIR  780
HYGSEMIHDF VG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-15576634563Homeobox protein Meis2
3k2a_B1e-15576634563Homeobox protein Meis2
4xrm_A1e-15576634563Homeobox protein Meis2
4xrm_B1e-15576634563Homeobox protein Meis2
4xrs_A1e-15576633158Homeobox protein Meis1
4xrs_B1e-15576633158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008462889.10.0PREDICTED: homeobox protein BEL1 homolog isoform X2
TrEMBLA0A1S3CHZ10.0A0A1S3CHZ1_CUCME; homeobox protein BEL1 homolog isoform X2
STRINGXP_008462867.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34813257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-89BEL1-like homeodomain 8