PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C004947P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 319aa    MW: 36180.1 Da    PI: 8.0214
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C004947P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.83.4e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l+d + + G+g +W + +++ g++R++k+c++rw++yl
   MELO3C004947P1 14 KGPWSPEEDAKLKDFIDKNGTGgNWISLPQKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding39.71.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd ++  ++   G++ W+ Ia  ++ gRt++++k++w++
   MELO3C004947P1  69 GGFTDEEDRIICTLFSTIGSR-WSIIATQLP-GRTDNDIKNHWNS 111
                      569******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.68962IPR017930Myb domain
SuperFamilySSF466891.6E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002493.9E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-231569IPR009057Homeodomain-like
CDDcd001671.82E-71662No hitNo description
PROSITE profilePS5129422.49863117IPR017930Myb domain
SMARTSM007171.6E-1167115IPR001005SANT/Myb domain
PfamPF002495.5E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-2370118IPR009057Homeodomain-like
CDDcd001678.10E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRSPCCDKS NVKKGPWSPE EDAKLKDFID KNGTGGNWIS LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGG FTDEEDRIIC TLFSTIGSRW SIIATQLPGR TDNDIKNHWN SKLKRKLIEM  120
EKKAQITTTI PSSQNHHHHH QTFSSFSSQP LSSLINKHDD YFNDINYSNY NLSSPPSTTT  180
IKSFESLISS IPSNWSNNNN NISHSPCLVQ TQETTNLLSS NSLMYNHHNP LVQMKESCLL  240
GFGSEGSCSS STSDGRSYTQ INTTSGIMGF QNNNNNNPNY YYYYSDNIMN NINHQQAANL  300
EYSYMEDENK TLLENFLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022964958.11e-107transcription factor MYB87-like
TrEMBLA0A0A0LUZ61e-173A0A0A0LUZ6_CUCSA; Uncharacterized protein
STRINGXP_008464692.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2450233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-75myb domain protein 36