PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005009P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 205aa    MW: 22340.6 Da    PI: 6.8765
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005009P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.22.4e-42371361100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll +lp+++r da+sslvyeA ar+rdPvyG++g i +lq+q+++l+aela
  MELO3C005009P1  37 PCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELA 131
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  MELO3C005009P1 132 KTQAE 136
                     *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.42636137IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-4137134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MESREVKSSP TSTLLSQSPS PSPSPPPTVQ APVVVSPCAA CKILRRRCAE KCVLAPYFPP  60
SDPLKFTIAH RIFGASNIIK LLLDLPDSQR ADAVSSLVYE ASARIRDPVY GCAGAICQLQ  120
KQINELQAEL AKTQAELVNI HCHQTNLVAL ICKELAQTPP PMSSLSLLPD HRSLDNNFNI  180
ATPQSYQGYT SLFEDSNIWD PLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-42321486122LOB family transfactor Ramosa2.1
5ly0_B1e-42321486122LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463550.11e-148PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-66LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S3CK121e-147A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRINGXP_008463550.11e-148(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130334106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.15e-64LOB domain-containing protein 1