PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005013P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 178aa    MW: 20037.2 Da    PI: 7.7652
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005013P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40211201100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+C ++C l pyfp  +p kf ++h++FGasn++kll++lp+++r da++s+vyeA ar+rdP+yG++g i++lq+q++ l+ ela
  MELO3C005013P1  21 PCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGASNIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELA 115
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  MELO3C005013P1 116 KAQAE 120
                     99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.1820121IPR004883Lateral organ boundaries, LOB
PfamPF031956.9E-4021118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKKSEEANTA SAVVVMGSTQ PCAACKILRR RCRENCELGP YFPPMEPLKF TIAHRVFGAS  60
NIIKLLQNLP KSQRADAVNS MVYEASARIR DPIYGCAGSI FHLQRQINDL QIELAKAQAE  120
VLRMHCQQAN LMTLICKELG QMPEPPMHDH YNIASPQGYY SYSYLFEESN VLEPLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-43111431123LOB family transfactor Ramosa2.1
5ly0_B8e-43111431123LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819280.0LN681928.1 Cucumis melo genomic scaffold, anchoredscaffold00004.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463578.11e-132PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-61LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A1S3CK311e-130A0A1S3CK31_CUCME; LOB domain-containing protein 1-like
STRINGXP_008463578.11e-131(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2450033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-63LOB domain-containing protein 1