PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MELO3C005610P2

Organism

Cucumis melo

Taxonomic ID

3656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 177aa MW: 20296.2 Da PI: 8.3215

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MELO3C005610P2	genome	MELONOMICS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.7	1.6e-11	2	50	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ s +++Lr+llP ++K s + ++v+YI+++q MELO3C005610P2 2 HRDVERQRRQEMSSLYSTLRSLLPIeY---LKGKRSICDHMHETVKYIRYMQ 50 999********************77...9*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.76	1	49	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-10	2	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-12	2	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-8	2	50	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.88E-9	2	54	No hit	No description
SMART	SM00353	1.9E-4	3	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MHRDVERQRR QEMSSLYSTL RSLLPIEYLK GKRSICDHMH ETVKYIRYMQ SKIQELCDKR 60 DELKKLQSNN QNPDMVETET LKSTKRDKVV VRARDGSGGI QVILDTATRH RLPLSNILVA 120 LTDQGLEILS CSSNKLNDRF LHTIESQPVF TSTNSPIIDV SGLQYTLTNL EYCPLD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681895	0.0	LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008437182.1	1e-126	PREDICTED: transcription factor bHLH36-like
TrEMBL	A0A1S3ATY1	1e-125	A0A1S3ATY1_CUCME; transcription factor bHLH36-like
STRING	XP_008437182.1	1e-126	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	4e-34	bHLH family protein