PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005699P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family TALE
Protein Properties Length: 212aa    MW: 24067 Da    PI: 8.9674
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005699P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-091111481954
                     HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  MELO3C005699P1 111 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 148
                     664459******************************98 PP
2BELL58.41.8e-191433072
            BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                    +++v++sFeavag g+a++Y +lA+ka+SrhFr+Lkd i++qi
  MELO3C005699P1  1 MKAVVASFEAVAGSGAARVYSALASKAMSRHFRSLKDGIVGQI 43
                    89****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.7E-14139IPR006563POX domain
PROSITE profilePS5007112.17989152IPR001356Homeobox domain
SMARTSM003895.8E-992156IPR001356Homeobox domain
CDDcd000861.02E-1192153No hitNo description
SuperFamilySSF466898.13E-1893159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-2895158IPR009057Homeodomain-like
PfamPF059201.8E-18109148IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MKAVVASFEA VAGSGAARVY SALASKAMSR HFRSLKDGIV GQIQATRKAM GEKDPIAPGT  60
TRGETPRLRV IDQALRQQRA FHQISIMESH PWRPQRGLPE RSVSVLRAWL FEHFLHPYPS  120
DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYLE ETKEQEEEID NSFNNNANNS  180
FDGVTDFNDD IDGHRSIATR LEDQNRHQIN S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-1698156563Homeobox protein Meis2
3k2a_B1e-1698156563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437318.11e-148PREDICTED: LOW QUALITY PROTEIN: homeobox protein BEL1 homolog
SwissprotQ388977e-83BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A1S3AUA21e-146A0A1S3AUA2_CUCME; LOW QUALITY PROTEIN: homeobox protein BEL1 homolog
STRINGXP_008437318.11e-147(Cucumis melo)
STRINGXP_004143976.11e-148(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46502030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.14e-84TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]