PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005807P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family B3
Protein Properties Length: 398aa    MW: 44400.3 Da    PI: 7.4742
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005807P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.22.5e-3157161199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ + ++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  MELO3C005807P1  57 FDKVVTPSDVGKLNRLVIPKQHAERFfpldSSTNDKGLLLNFEDRNGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGiGEiGR 151
                     89***************************9555568889************************************************65599999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  MELO3C005807P1 152 DRLYIDWRRR 161
                     9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-4152163IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.5E-3054163IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-2755144No hitNo description
PROSITE profilePS5086314.77657162IPR003340B3 DNA binding domain
PfamPF023628.0E-2957161IPR003340B3 DNA binding domain
SMARTSM010192.5E-2257162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MNFGVNTLQN HHLQPRNRLD LIMMEPPEAE EEAGGGSNSG SGSGGRGGEV VEREHMFDKV  60
VTPSDVGKLN RLVIPKQHAE RFFPLDSSTN DKGLLLNFED RNGKSWRFRY SYWNSSQSYV  120
MTKGWSRFVK EKRLDAGDIV SFQRGIGEIG RDRLYIDWRR RPELPLHHYP ITTTTTAIRP  180
SIVIPSGSGA TAAWGPLVWQ PLGVTTAGYH HQPAAVTPRD HTHLPRNNNN SNNNNGNGMC  240
CPYGYGSSGV ETTSSGLVYL RTELGGKSSR RVIGTPRLGE DQELELEMDR NFNNYQMQQE  300
YCSNGGGGAS MVVLQGNYSM ENHHHHHQKL NNNNNNNYSE EDTPVKKSRL RLFGVNMEME  360
SPISSPSSDE CDLLLSTNPK TTTSTTQFQL PSPSIYK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A9e-68501641116B3 domain-containing transcription factor NGA1
5os9_B9e-68501641116B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437475.10.0PREDICTED: uncharacterized protein LOC103482885
TrEMBLA0A1S3AU440.0A0A1S3AU44_CUCME; uncharacterized protein LOC103482885
STRINGXP_008437475.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-67B3 family protein