PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MELO3C005808P1
Organism
Cucumis melo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 218aa    MW: 23035.5 Da    PI: 4.8857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MELO3C005808P1genomeMELONOMICSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.7e-191766255
             AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                    +y GVr+++ +grWv+eI+d      ++ r +lg+f+taeeAa+a++ a+++l+g
  MELO3C005808P1 17 RYVGVRQRP-SGRWVSEIKD----SlQKVRLWLGTFDTAEEAARAYDDAARALRG 66
                    79*******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-201775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-291774IPR001471AP2/ERF domain
PfamPF008474.2E-131766IPR001471AP2/ERF domain
CDDcd000181.39E-211776No hitNo description
PROSITE profilePS5103220.7981774IPR001471AP2/ERF domain
SMARTSM003802.6E-381780IPR001471AP2/ERF domain
PRINTSPR003678.9E-91829IPR001471AP2/ERF domain
PRINTSPR003678.9E-94056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MAMGSCRKKA SSRGHHRYVG VRQRPSGRWV SEIKDSLQKV RLWLGTFDTA EEAARAYDDA  60
ARALRGSNAR TNFEYLPPSS CDSGADAGDA NQPIESPFSF EEGCIEEDGL LGALKAKLFD  120
GKGQRVLQAV AQTTCCSTTD NLINTNNNSN YNETIIQGGI HPPPVLSSGQ VDVVTAELDS  180
GGGSGWFNAS STVGLHAWPV VLGGLEEGGN IGDVCVM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1515731271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818950.0LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008437477.11e-161PREDICTED: ethylene-responsive transcription factor ERF096-like
TrEMBLA0A1S3AUP51e-160A0A1S3AUP5_CUCME; ethylene-responsive transcription factor ERF096-like
STRINGXP_008437477.11e-161(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.16e-19related to AP2 11